BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or …

Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download …

BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or …

To inform BEAUti/BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option. By default all the taxa are assumed to have a date of zero …

Click Copy and open the link in a new browser tab/window. To summarise Bayes factor support for rates, select the Discrete Rates tab. Load the output BEAST file containing the spatial rates …

BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees. Downloading BEAST Installing using Conda Installing directly Installing OpenJDK 8 Installing …

LogCombiner allows you to combine log and tree files from multiple independent runs of BEAST. It can be run with a user-interface or as a command-line utility.

FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures.

Installing BEAST BEAST has been developed in Java, which allows the same code to run on any platform that has the Java software installed. We have also created packages for each of the …

Introduction Genomic epidemiology combines classical epidemiological methods with genome sequence data to track and monitor both endemic pathogens and the emergence and spread …